CHARMM. Molecular Dynamics Simulations: Introduction with applications through the CHARMM program.
Molecular Dynamics: A tutorial published by the Center for Molecular Modeling of the U.S. National Institutes of Health.
Molecular Dynamics and Nanotechnology Tutorial Overheads: Analytic Potentials and Molecular Dynamics Simulation by Donald W. Brenner. Part of the tutorial on Critical Enabling Technologies for Nanotechnology, Fifth Foresight Conference on Molecular Nanotechnology, November 5, 1997.
Molecular Dynamics Simulations of Polymers: An Introduction: Introduction with emphasis on polymer applications; powerpoint presentation.