| Phylogeny at Pasteur: A collection of phylogenetics programs available at Pasteur Institute. Includes a number of Phylip programs. |
| ClustalW: EBI server for multiple sequence alignment on the web |
| GRIMM/MGR: A tool for constructing phylogenies based on gene order for unichromosomal and multichromosomal genomes |
| MatTree: An online server that hosts Distance Matrix based tools for phylogenetic clustering and comparison of phylogenetic trees. |
| MultAlign: A multiple-sequence alignment program that also includes distance matrix methods for inferring trees. |
| SplitsTree 2: Tool that uses split decomposition method to analyze and visualize distance data from biological sequences. |
| TreeGen: Tree generation from distance data. [Results by email] |
| TreeTop: Multiple sequence alignment based phylogenetic tree prediction program. |
| Vista tools: Multiple sequence alignment server and whole genome alignment database. |
Classical
