Phylogeny at Pasteur:A collection of phylogenetics programs available at Pasteur Institute. Includes a number of Phylip programs.
ClustalW: EBI server for multiple sequence alignment on the web
GRIMM/MGR: A tool for constructing phylogenies based on gene order for unichromosomal and multichromosomal genomes
MatTree: An online server that hosts Distance Matrix based tools for phylogenetic clustering and comparison of phylogenetic trees.
MultAlign: A multiple-sequence alignment program that also includes distance matrix methods for inferring trees.
SplitsTree 2: Tool that uses split decomposition method to analyze and visualize distance data from biological sequences.
TreeGen: Tree generation from distance data. [Results by email]
TreeTop: Multiple sequence alignment based phylogenetic tree prediction program.
Vista tools: Multiple sequence alignment server and whole genome alignment database.