| Allen Brain Atlas: Database of gene expression patterns in the mouse brain. |
| Exploring the Metabolic and Generic Control of Gene Expression: Database with the data for the experiments in the paper - DeRisi et. al. Science 278: 680-686. Includes text files that can be downloaded. The original paper requires a subscription fee. |
| Gene Expression in Tooth: Database on the expression of different genes in the developing tooth. |
| Gene Expression Omnibus: Database of gene expression data from NCBI. Includes a definable search by different characteristics. |
| GeneExpress: Designed for analysis of genomic regulatory sequences of higher eukaryotes. Includes several databases and programs for visualization of the information contained . |
| GenePaint: Database of gene expression patterns in the mouse embryo. |
| GeneSifter Data Center: Database for the GeneSifter microarray data analysis system in selected conditions. |
| IRES Database: Database on gene expression with information on Internal Ribosome Entry Sites IRES. |
| Kyoto Encyclopedia of Genes and Genomes (KEGG): Graphical and hypertext-based information on biochemical pathways, including metabolic and regulatory pathways cell cycle and growth factor signaling. |
| Mirage: Information methodologies, tools, and technologies relating to the study of gene expression and signal transduction from the Institute for Transcriptional Informatics (IFTI), USA. |
| Novartis Gene Expression Atlas: Database on gene expression in men and mice. |
| Ribosomal Database Project: From Center for Microbial Ecology, Michigan State University, USA |
| Rice Transcription Factor Database: RiceTFDB is a public database of rice genes involved in transcriptional control. From the University of Potsdam, Berlin, Germany. |
| RNase P Database: A compilation of RNase P sequences, sequence alignments, secondary structures, three-dimensional structures, and accessory information. |
| SAGEmap: Data resource collection for the retrieval and analysis of gene expression data from any organism, from the National Center for Biotechnology Information, National Institutes of Health, USA. |
| Stanford Microarray Database: Stores raw and normalized data from microarray experiments, and corresponding image files. Some data access is limited to registered Stanford researchers. Makes available online analysis tools. Code base is open source and available for download. |
| SymAtlas: Database covering the genomes of humans and mice. Includes integrated publishing datasets software and FAQ maintained by the Genomics Institute of the Novartis Research Foundation. |
| The Database of Rice Transcription Factors (DRTF): Free of charge database of transcription factors of rice. From CBI, Peking University, China. |
| WormBase: Data bases on the genetics of C elegans and related nematodes. |
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